preprints

Parameterization of a Stochastic Model of Gene Expression from Adaptive Imaging Cytometry Data

Parameterization of a Stochastic Model of Gene Expression from Adaptive Imaging Cytometry Data

Supplementary material to a manuscript under review. The manuscript can be downloaded from the link below. 

Abstract

Recent decades have yielded an understanding of cellular behavior as arising from a complicated soup of noisy molecular interactions. Systems biologists [...]

378
Views
459
DLs

Adaptive imaging cytometry to estimate parameters of gene networks models in systems and synthetic biology

Adaptive imaging cytometry to estimate parameters of gene networks models in systems and synthetic biology

Supplementary material to a manuscript under review. The manuscript can be downloaded from the link below. 

Abstract

Recent decades have yielded an understanding of cellular behavior as arising from a complicated soup of noisy molecular interactions. Systems biologists [...]

378
Views
459
DLs

SBOL: A community standard for communicating designs in synthetic biology

SBOL: A community standard for communicating designs in synthetic biology

Abstract

The Synthetic Biology Open Language (SBOL) is a proposed data standard for exchanging designs within the synthetic biology community. SBOL represents synthetic biology designs in a community-adopted, formalized format for exchange between software tools, research groups, and commercial service providers. The [...]

1473
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212
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Several current and former members the Peccoud Lab are co-authors of this manuscript.

Improving DNA Manufacturing Through Standardization

Improving DNA Manufacturing Through Standardization

 

By framing gene synthesis as a manufacturing problem, it is possible to utilize common Industrial Engineering (IE) principles that have been applied to numerous macroscale systems in the burgeoning realm of DNA fabrication. These techniques have been successfully employed in an academic [...]

424
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281
DLs

This manuscript was submitted for presentation at IWBDA 2013. It was not accepted. The reviews we received are copied below. The manuscript will eventually be revised and published elsewhere. ----------------------- REVIEW 1 --------------------- PAPER: 11 TITLE: Improving DNA Manufacturing Through...