genocad

GenoCAD Grammar to design synthetic transcription factors in eukaryotes

GenoCAD Grammar to design synthetic transcription factors in eukaryotes

This file can be imported into GenoCAD for the design of synthetic transcription factors (sTFs) in eukaryotic cells. Knowledge derived from experimental evidence was captured in this grammar to guide the user to create designer transcription factors that should operate as intended. The grammar [...]

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We like to use Figshare as a central repository of grammars for GenoCAD. This grammar is described in a paper published in ACS Synthetic Biology doi:10.1021/sb400134k

GenoCAD Grammar to design Chlamydomonas reinhardtii expression vectors

GenoCAD Grammar to design Chlamydomonas reinhardtii expression vectors

This is a grammar that can be imported into the web-based application GenoCAD to design expression vectors for expressing genes in the chloroplast of Chlamydomonas reinhardtii. Please refer to the publication linked to this entry for more information about this dataset. 

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This dataset was included in the online supplement of a publication in Bioinformatics:   http://dx.doi.org/10.1093/bioinformatics/btt646 Even though this article is published open access, we like to use Figshare as our central repository of GenoCAD grammars.

GenoCAD Legacy Grammars

GenoCAD Legacy Grammars

This fileset includes three grammars that were described in papers related to GenoCAD published between 2007 and 2010. 

These grammars can be imported into GenoCAD. 

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GenoCAD Tutorials

GenoCAD Tutorials

This tutorial includes two PowerPoint presentations developed by Mary Mangan from OpenHelix. Students should start with the Introduction prior to moving on to the Advanced tutorial. The slides decks include numerous comments that will help students go through the tutorials.

In order [...]

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